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Accueil > Research > Research teams > Computational Molecular Systems Biology > Publications

Computational Molecular Systems Biology

2019

Majee A, Bier M, Blossey R, Podgornik R.
Charge regulation radically modifies electrostatics in membrane stacks.
Physical review E. 2019. doi : 10.1103/PhysRevE.100.050601

Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkūnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Honorato RV, Bonvin AMJJ, Wodak SJ.
Blind prediction of homo- and hetero-protein complexes : The CASP13-CAPRI experiment.
Proteins. 2019 Dec ;87(12):1200-1221. doi : 10.1002/prot.25838. Epub 2019 Oct 25. PubMed PMID : 31612567.

Padra JT, Pagneux Q, Bouckaert J, Jijie R, Sundh H, Boukherroub R, Szunerits S, Lindén SK.
Mucin modified SPR interfaces for studying the effect of flow on pathogen binding to Atlantic salmon mucins.
Biosens Bioelectron. 2019 Dec 15 ;146:111736. doi : 10.1016/j.bios.2019.111736. Epub 2019 Sep 27. PubMed PMID : 31586762.

Khoder-Agha F, Harrus D, Brysbaert G, Lensink MF, Harduin-Lepers A, Glumoff T, Kellokumpu S.
Assembly of B4GALT1/ST6GAL1 heteromers in the Golgi membranes involves lateral interactions via highly charged surface domains.
J Biol Chem. 2019 Sep 27 ;294(39):14383-14393. doi : 10.1074/jbc.RA119.009539. Epub 2019 Aug 8. PubMed PMID : 31395657 ; PubMed Central PMCID : PMC6768654.

Cauwel M, Sivignon A, Bridot C, Nongbe MC, Deniaud D, Roubinet B, Landemarre L, Felpin FX, Bouckaert J, Barnich N, Gouin SG.
Heptylmannose-functionalized cellulose for the binding and specific detection of pathogenic E. coli.
Chem Commun (Camb). 2019 Sep 4 ;55(68):10158-10161. doi : 10.1039/c9cc05545b. Epub 2019 Aug 7. PubMed PMID : 31389420.

Blossey R, Schiessel H.
Histone mark recognition controls nucleosome translocation via a kinetic proofreading mechanism : Confronting theory and high-throughput experiments.
Phys Rev E. 2019 Jun ;99(6-1):060401. doi : 10.1103/PhysRevE.99.060401. PubMed PMID : 31330635.

Krammer EM, Prévost M.
Function and Regulation of Acid Resistance Antiporters. J Membr Biol. 2019 Oct ;252(4-5):465-481. doi : 10.1007/s00232-019-00073-6. Epub 2019 Jun 25. PubMed PMID : 31240358.

Brysbaert G, de Ruyck J, Aumercier M, Lensink MF.
Identification of Novel Interaction Partners of Ets-1 : Focus on DNA Repair.
Genes (Basel). 2019 Mar 8 ;10(3). pii : E206. doi : 10.3390/genes10030206. PubMed PMID : 30857266 ; PubMed Central PMCID : PMC6470857.

Buyukdagli S, Ala-Nissila T, Blossey R.
Comment on ’Nonlocal statistical field theory of dipolar particles in electrolyte solutions’. J Phys Condens Matter. 2019 Feb 20 ;31(7):078001. doi : 10.1088/1361-648X/aaf8c6. Epub 2018 Dec 17. PubMed PMID : 30557862.

Brissonnet Y, Assailly C, Saumonneau A, Bouckaert J, Maillasson M, Petitot C, Roubinet B, Didak B, Landemarre L, Bridot C, Blossey R, Deniaud D, Yan X, Bernard J, Tellier C, Grandjean C, Daligault F, Gouin SG.
Multivalent Thiosialosides and Their Synergistic Interaction with Pathogenic Sialidases.
Chemistry. 2019 Feb 11 ;25(9):2358-2365. doi : 10.1002/chem.201805790. Epub 2019 Jan 11. PubMed PMID : 30516296.

Brysbaert G, Mauri T, de Ruyck J, Lensink MF.
Identification of Key Residues in Proteins Through Centrality Analysis and Flexibility Prediction with RINspector. Curr Protoc Bioinformatics. 2019 Mar ;65(1):e66. doi : 10.1002/cpbi.66. Epub 2018 Nov 29. PubMed PMID : 30489695.

Jafari H, Amiri M, Abdi E, Navid SL, Bouckaert J, Jijie R, Boukherroub R, Szunerits S.
Entrapment of uropathogenic E. coli cells into ultra-thin sol-gel matrices on gold thin films : A low cost alternative for impedimetric bacteria sensing.
Biosens Bioelectron. 2019 Jan 15 ;124-125:161-166. doi : 10.1016/j.bios.2018.10.029. Epub 2018 Oct 16. PubMed PMID : 30368107.

Blossey R, Schiessel H.
Chromatin remodelers as active Brownian dimers.
Journal of physics A - Mathematical and theoretical. 2019. doi : 10.1088/1751-8121/aafea0